New and Emerging Proteomic Techniques

Preface v Contributors xi 1 On-Chip Protein Synthesis for Making Microarrays Niroshan Ramachandran, Eugenie Hainsworth, Gokhan Demirkan, and Joshua LaBaer 1(14) 2 RCA-Enhanced Protein Detection Arrays Brian B. Haab and Paul M. Lizardi 15(16) 3 Antibody Microarrays Using Resonance Light-Scattering Particles for Detection Bernhard H. Geierstanger, Petri Saviranta, and Achim Brinker 31(20) 4 Chemical Proteomics Profiling of Proteasome Activity Martijn Verdoes, Celia R. Berkers, Bogdan I. Florea, Paul F. van Swieten, Herman S. Overkleeft, and Huib Ovaa 51(20) 5 Two-Dimensional Difference Gel Electrophoresis Terence L. Wu 71(26) 6 Oligomeric States of Proteins Determined by Size-Exclusion Chromatography Coupled With Light Scattering, Absorbance, and Refractive Index Detectors Ewa Folta-Stogniew 97(16) 7 Surface Plasmon Resonance Imaging Measurements of Protein Interactions With Biopolymer Microarrays Terry T. Goodrich, Alastair W. Wark, Robert M. Corn, and Hye Jin Lee 113(18) 8 Surface Plasmon Resonance Mass Spectrometry for Protein Analysis Dobrin Nedelkov and Randall W. Nelson 131(10) 9 High-Throughput Affinity Mass Spectrometry Urban A. Kiernan, Dobrin Nedelkov, Eric E. Niederkofler, Kemmons A. Tubbs, and Randall W. Nelson 141(10) 10 Isotope-Coded Affinity Tags for Protein Quantification Christopher M. Colangelo and Kenneth R. Williams 151(8) 11 Proteomic Analysis by Multidimensional Protein Identification Technology Laurence Florens and Michael P. Washburn 159(18) 12 Isolation of Glycoproteins and Identification of Their N-Linked Glycosylation Sites Hui Zhang and Ruedi Aebersold 177(10) 13 N-Glycosylation Analysis Using the StrOligo Algorithm Martin Ethier, Daniel Figeys, and Helene Perreault 187(12) 14 MALDI-MS Data Analysis for Disease Biomarker Discovery Weichuan Yu, Baolin Wu, Junteng Liu, Xiaoye Li, Kathy Stone, Kenneth R. Williams, and Hongyu Zhao 199(18) 15 Using the Global Proteome Machine for Protein Identification Ronald C. Beavis 217(12) Index 229