Protein Function Prediction

Methods and Protocols

Specificaties
Gebonden, blz. | Engels
Springer New York | e druk, 2017
ISBN13: 9781493970131
Rubricering
Juridisch :
Springer New York e druk, 2017 9781493970131
Onderdeel van serie Methods in Molecular Biology
Verwachte levertijd ongeveer 9 werkdagen

Samenvatting

This volume presents established bioinformatics tools and databases for function prediction of proteins. Reflecting the diversity of this active field in bioinformatics, the chapters in this book discuss a variety of tools and resources such as sequence-, structure-, systems-, and interaction-based function prediction methods, tools for functional analysis of metagenomics data, detecting moonlighting-proteins, sub-cellular localization prediction, and pathway and comparative genomics databases. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step instructions of how to use software and web resources, use cases, and tips on troubleshooting and avoiding known pitfalls.

Thorough and cutting-edge, Protein Function Prediction: Methods and Protocols is a valuable and practical guide for using bioinformatics tools for investigating protein function</p>

Specificaties

ISBN13:9781493970131
Taal:Engels
Bindwijze:gebonden
Uitgever:Springer New York

Inhoudsopgave

<p>Using PFP and ESG Protein Function Prediction Web Servers.-&nbsp;GHOSTX: A Fast Sequence Homology Search Tool for Functional Annotation of Metagenomic Data.-&nbsp;From Gene Annotation to Function Prediction for Metagenomics.-&nbsp;An Agile Functional Analysis of Metagenomic Data using SUPER-FOCUS.-&nbsp;MPFit: Computational Tool for Predicting Moonlighting Proteins.-&nbsp;Predicting Secretory Proteins with SignalP.-&nbsp;The ProFunc Function Prediction Server.-&nbsp;G-LoSA for Prediction of Protein-Ligand Binding Sites and Structures.-&nbsp;Local Alignment of Ligand Binding Sites in Proteins for Polypharmacology and Drug Repositioning.-&nbsp;WATsite2.0 with PyMOL Plugin: Hydration Site Prediction and Visualization.-&nbsp;Enzyme Annotation and Metabolic Reconstruction Using KEGG.-&nbsp;Ortholog Identification and Comparative Analysis of Microbial Genomes using MBGD and RECOG.-&nbsp;Exploring Protein Function Using the Saccharomyces Genome Database.-&nbsp;Network-Based Gene Function Prediction in Mouse and Other Model Vertebrates using MouseNet Server.-&nbsp;The FANTOM5 Computation Ecosystem: Genomic Information Hub for Promoters and Active Enhancers.-&nbsp;Multi-Algorithm Particle Simulations with Spatiocyte.</p>

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        Protein Function Prediction